PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G273000.1
Common NameB456_009G273000, LOC105770609
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 87aa    MW: 9800.73 Da    PI: 6.5263
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G273000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.9e-081558344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         WT+   +l+ +a + +  +   +W ++a+ +g  +t+++++ ++
  Gorai.009G273000.1 15 YWTPKQNKLFEKALAVYDRDtpdRWQKVAAAVG-DKTPEEVRRHY 58
                        5*****************99*************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.3211166IPR017884SANT domain
SMARTSM007174.4E-71264IPR001005SANT/Myb domain
PfamPF002495.9E-71558IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-51668IPR009057Homeodomain-like
SuperFamilySSF466894.93E-131669IPR009057Homeodomain-like
CDDcd001675.02E-71658No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MSSSSKTSSR DSNSYWTPKQ NKLFEKALAV YDRDTPDRWQ KVAAAVGDKT PEEVRRHYEI  60
LVTDVNHIES GQIPIPDYES TGNNSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-32886381RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447340.16e-59PREDICTED: protein RADIALIS-like 3
SwissprotQ58FS31e-32RAD_ANTMA; Transcription factor RADIALIS
TrEMBLA0A0D2TSM16e-59A0A0D2TSM1_G
STRINGVIT_03s0063g02670.t011e-36(Vitis vinifera)
STRINGPOPTR_0005s12390.11e-36(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-31RAD-like 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]